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second strand cdna synthesis  (New England Biolabs)


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    New England Biolabs second strand cdna synthesis
    Second Strand Cdna Synthesis, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 7073 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/second+strand+cdna+synthesis/Klenow+Fragment/pm41360290-88-0-19
    Average 99 stars, based on 7073 article reviews
    second strand cdna synthesis - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    cDNA Synthesis:

    Article Title: Cohesin acts as a transcriptional gatekeeper by restraining pause–release to promote processive elongation
    Article Snippet: For each library, 200 ng of HCT-116 RNA was mixed with 20 ng of S2 mRNA, and EU-labelled RNA was isolated with Click-iT Nascent RNA Capture Kit (Thermo Fisher). cDNA was synthesized with SuperScript VILO cDNA synthesis kit (Thermo Fisher). .. Second-strand cDNA synthesis and library preparation were performed with NEBNext Ultra II Directional RNA Library Prep Kit for Illumina and NEBNext Multiplex Oligos for Illumina (New England BioLabs). .. The library was sequenced on Nextseq 2000 (Illumina).

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses.
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: Digital severity scoring and viral metagenomics: A feasibility study on integrated diagnosis of pediatric influenza-like illness.
    Article Snippet: Following a previously published protocol [22, 23], 200 U SuperScript III reverse transcriptase (Invitrogen, Waltham, MA, USA), 0.5 mM of each deoxynucleoside triphosphate, 10 mM dithiothreitol, and 1× diluted firststrand extension buffer were added and incubated at 25°C for 10 minutes, followed by 50°C incubation for 1 hour and 70°C for 15 minutes. .. Second-strand cDNA synthesis was performed by incubation of reverse transcribed products with 5 U of Klenow Fragment DNA polymerase (New England Biolabs, Ipswich, MA, USA) at 37°C for 1 hour followed by 75°C for 20 minutes. ..

    Article Title: Comparative Transcriptome Analysis of Henosepilachna vigintioctomaculata Reveals Critical Pathways during Development
    Article Snippet: The transcriptome libraries were constructed using the NEBNext UltraTM RNA Library Prep Kit for Illumina (NEB, San Diego, CA, USA) following the standard manufacturer’s instructions. .. The first-strand cDNA was reverse-transcribed using fragmented RNA and dNTPs (dATP, dTTP, dCTP, and dGTP) and second-strand cDNA synthesis was subsequently performed using the NEBNext FirstStrand Synthesis kit. ..

    Article Title: RNA interference targeting cytochrome P450 cyp303a1 on the performance of Henosepilachna vigintioctopunctata.
    Article Snippet: CYP303A1 is vital for metamorphosis in Locusta migratoria and Drosophila melanogaster.. Here we uncovered that RNA interference (RNAi) against Hvcyp303a1 in the third instar larvae in a Coleopteran Henosepilachna vigintioctopunctata caused severe phenotypic defects.. The Hvcyp303a1 RNAi larvae grew slowly, had thin head capsule and soft scoli, and ate less potato foliage.

    Article Title: NPM1 mislocalization mediated by RNA Pol I inhibition alters chromatin landscape
    Article Snippet: .. 8 ml of NEBNext Strand Specificity Reagent (brown) and 2 ml of NEBNext First Strand Synthesis Enzyme mix were added and incubated first at 25°C for 10 min, then 42°C for 15 min and 70°C for 15 min. After samples were put on ice, second strand cDNA synthesis was performed using 8 ml of NEBNext Second Strand cDNA Synthesis Reaction Buffer with dUTP mix (orange), 4 ml of NEBNext Second Strand cDNA Synthesis Enzyme Mix (orange) and 48 ml of nuclease free water for 1h at 16°C. .. 144 ml (1.8x) NEBNext RNA Sample Purification Beads (NEB # E7767S) were added and incubated for 5 min at RT.

    Multiplex Assay:

    Article Title: Cohesin acts as a transcriptional gatekeeper by restraining pause–release to promote processive elongation
    Article Snippet: For each library, 200 ng of HCT-116 RNA was mixed with 20 ng of S2 mRNA, and EU-labelled RNA was isolated with Click-iT Nascent RNA Capture Kit (Thermo Fisher). cDNA was synthesized with SuperScript VILO cDNA synthesis kit (Thermo Fisher). .. Second-strand cDNA synthesis and library preparation were performed with NEBNext Ultra II Directional RNA Library Prep Kit for Illumina and NEBNext Multiplex Oligos for Illumina (New England BioLabs). .. The library was sequenced on Nextseq 2000 (Illumina).

    Reverse Transcription:

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses.
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: Digital severity scoring and viral metagenomics: A feasibility study on integrated diagnosis of pediatric influenza-like illness.
    Article Snippet: Following a previously published protocol [22, 23], 200 U SuperScript III reverse transcriptase (Invitrogen, Waltham, MA, USA), 0.5 mM of each deoxynucleoside triphosphate, 10 mM dithiothreitol, and 1× diluted firststrand extension buffer were added and incubated at 25°C for 10 minutes, followed by 50°C incubation for 1 hour and 70°C for 15 minutes. .. Second-strand cDNA synthesis was performed by incubation of reverse transcribed products with 5 U of Klenow Fragment DNA polymerase (New England Biolabs, Ipswich, MA, USA) at 37°C for 1 hour followed by 75°C for 20 minutes. ..

    Article Title: Comparative Transcriptome Analysis of Henosepilachna vigintioctomaculata Reveals Critical Pathways during Development
    Article Snippet: The transcriptome libraries were constructed using the NEBNext UltraTM RNA Library Prep Kit for Illumina (NEB, San Diego, CA, USA) following the standard manufacturer’s instructions. .. The first-strand cDNA was reverse-transcribed using fragmented RNA and dNTPs (dATP, dTTP, dCTP, and dGTP) and second-strand cDNA synthesis was subsequently performed using the NEBNext FirstStrand Synthesis kit. ..

    Article Title: RNA interference targeting cytochrome P450 cyp303a1 on the performance of Henosepilachna vigintioctopunctata.
    Article Snippet: CYP303A1 is vital for metamorphosis in Locusta migratoria and Drosophila melanogaster.. Here we uncovered that RNA interference (RNAi) against Hvcyp303a1 in the third instar larvae in a Coleopteran Henosepilachna vigintioctopunctata caused severe phenotypic defects.. The Hvcyp303a1 RNAi larvae grew slowly, had thin head capsule and soft scoli, and ate less potato foliage.

    Purification:

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses.
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Sequencing:

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses.
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Article Title: New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses
    Article Snippet: Following RNA quality assessment, rRNA depletion was carried out via the Illumina MRZB12424 Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA, USA). .. First-strand cDNA synthesis was subsequently performed via ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA) at 25 °C for 10 min, 42 °C for 15 min, and 70 °C for 15 min. Second-strand cDNA synthesis was then conducted via NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs, Ipswich, MA, USA) at 16 °C for 1 h. The resulting cDNA was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA) and subjected to end repair via NEBNext End Repair Reaction Buffer and Enzyme Mix (New England BioLabs, Ipswich, MA, USA) at 20 °C for 30 min followed by 65 °C for 30 min. Sequencing adapters were ligated via NEBNext Adaptor for Illumina (New England BioLabs, Ipswich, MA, USA) at 20 °C for 15 min. .. Subsequently, the second-strand cDNA was degraded via the USER enzyme mix (New England BioLabs, Ipswich, MA, USA) at 37 °C for 15 min, and the resulting product was purified via Agencourt AMPure XP beads (Beckman Coulter, Brea, CA).

    Incubation:

    Article Title: Digital severity scoring and viral metagenomics: A feasibility study on integrated diagnosis of pediatric influenza-like illness.
    Article Snippet: Following a previously published protocol [22, 23], 200 U SuperScript III reverse transcriptase (Invitrogen, Waltham, MA, USA), 0.5 mM of each deoxynucleoside triphosphate, 10 mM dithiothreitol, and 1× diluted firststrand extension buffer were added and incubated at 25°C for 10 minutes, followed by 50°C incubation for 1 hour and 70°C for 15 minutes. .. Second-strand cDNA synthesis was performed by incubation of reverse transcribed products with 5 U of Klenow Fragment DNA polymerase (New England Biolabs, Ipswich, MA, USA) at 37°C for 1 hour followed by 75°C for 20 minutes. ..

    Article Title: NPM1 mislocalization mediated by RNA Pol I inhibition alters chromatin landscape
    Article Snippet: .. 8 ml of NEBNext Strand Specificity Reagent (brown) and 2 ml of NEBNext First Strand Synthesis Enzyme mix were added and incubated first at 25°C for 10 min, then 42°C for 15 min and 70°C for 15 min. After samples were put on ice, second strand cDNA synthesis was performed using 8 ml of NEBNext Second Strand cDNA Synthesis Reaction Buffer with dUTP mix (orange), 4 ml of NEBNext Second Strand cDNA Synthesis Enzyme Mix (orange) and 48 ml of nuclease free water for 1h at 16°C. .. 144 ml (1.8x) NEBNext RNA Sample Purification Beads (NEB # E7767S) were added and incubated for 5 min at RT.



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